Plant MITE

SE2550236

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1466
Brachypodium distachyon
SE2550236
PIF/harbinger
To32
Bd3:59793594-59793863
TTA
AGGCCACTCCCAACGCATCGTCTCTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT             C  ATC            TT  C    AGCCCACAATAAATGTTAAGAAACCATACCCCCAATGCACTGTCTCTTATTTTTGTCTCTAAAGTAGCAGTTATTTAATAACTTTGTGAGAAAGA
  AGGCCACTCCCAA GC   GTCTCTTATATG  GT TCTT                                                                                               
  ||||||||||||| ||   ||||||||||||  || ||||                                                                                                
  TCCGGTGAGGGTT CG   CAGAGAATCGTG  CA GTAG                                                                                               
AT             A  -AT            --  -    AATCCGTAAAACTACTGTACTGCAGAATAATTACTACTTTGGCAGAGAATACGATCGCTGGCAGAAAAGTGCGTTTGGTTGTGTTTCAGTAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550236

TTAGGCCACTCCCAACGCATCGTCTCTTATATGTTGTCTCTTAGCCCACAATAAATGTTAAGAAACCATACCCCCAATGCACTGTCTCTTATTTTTGTCTCTAAAGTAGCAGTTATTTAATAACTTTGTGAGAAAGAATTAATGACTTTGTGTTGGTTTGCGTGAAAAGACGGTCGCTAGCATAAGAGACGGTTTCATCATTAATAAGACGTCATGTCATCAAAATGCCTAAGATGACGTGCTAAGAGACTAGCATTGGGAGTGGCCTTA

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