Plant MITE

SE2510238

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1468
Brachypodium distachyon
SE2510238
Tc1/Mariner
St9
Bd1:43161407-43161643
TA
TACTCCCTCCGTTTGGGTTTATAAGGCT

Secondary structure and sequence

TSD TIR

5'

3'

                            -ATATT   G         CAC      --------------------------CA   --   ATTCAAATTGTATTTAATATATGTATATAAAAGTTATACCA
TACTCCCTCCGTTTGGGTTTATAAGGCT      GAA TTTGTGCCA   TTTGAC                            ACA  ATT                                         
||||||||||||||||||||||||||||      ||| |||||||||   ||||||                            |||  |||                                          
ATGAGGGAGGTAAACTCAAATGTTCCGG      CTT AAATACGGT   AAACTG                            ACG  GTG                                         
                            GTGCGC   A         TTA      TTTTTTATACAACCATTAGACTTTAATA   CC   TTTTCTATATAACAATCTAAGCATAATCTTTGAGAAAGATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510238

TACTCCCTCCGTTTGGGTTTATAAGGCTATATTGAAGTTTGTGCCACACTTTGACCAACAATTATTCAAATTGTATTTAATATATGTATATAAAAGTTATACCATTAGAAAGAGTTTCTAATACGAATCTAACAATATATCTTTTGTGCCGCAATAATTTCAGATTACCAACATATTTTTTGTCAAAATTTGGCATAAAATTCCGCGTGGGCCTTGTAAACTCAAATGGAGGGAGTA

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