SE2530247

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1477
  • Brachypodium distachyon
  • SE2530247
  • hAT
  • Hat22
  • Bd1:40105558-40106007
  • TGGCATTT
  • GC

Secondary structure and sequence

TSD    TIR
5'



3' 
  TG  ATTT                AGTAAT    AA  -          GTAGG  TTAGCGATTAATCGGTTATCGGACTGATTAATCGGTTTAATCGGTCGACTATTACACTATATAGTATATATAATTATATATTGGCCTACTTGCCGCATGAGAATCTTGGGAAGGTGCAGCCATCTAAAACAAATCAAGAGAAGCAAAGGCATCAGTGAAAATAGATGGGAGCAGC
    GC    CATTGTTCAAGAAATC      CGGT  CT GCTCGGTCGG     GA                                                                                                                                                                               
    ||    ||||||||||||||||      ||||  || ||||||||||     ||                                                                                                                                                                               A
    CG    GTAACAAGTTCTTTAG      CGGC  TA GTCGCTAATT     AG                                                                                                                                                                               
TTTA  --GT                -----C    --  A          -----  CCGGCTAATTAGCGACTAGCCGTCTGGTGGCACGTCTAATTGTGAATAGCGGCGTCAATTAGCGGGTTCGGCTAATTAGCCAGACTGTTGGCTAATTAGCCCTAATTAGGCGGCCGGTCGGGGACGAGCTTCGGAACTTCTCGAAGTTACTACGGAAACGAAGGAGGGTTCGACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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