SE2550248

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1478
  • Brachypodium distachyon
  • SE2550248
  • PIF/harbinger
  • To23
  • Bd1:31141652-31141973
  • TAA
  • AGGTAGTGTTTGGTTCTAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CTA   -----   GGT          GGAACGGTTCTATTCTTATAGGAATGGAATGTAATGGAACGGTTCTACTTTTCTATATCCTAAGAACCAAACATTTAGATCACTGGTTCTACTTGTAACCAACTCATTCCTACATTTTTGAG
  AGGTAGTGTTTGGTT   GAG     CTA   GGAATGGAAC                                                                                                                          
  |||||||||||||||   |||     |||   ||||||||||                                                                                                                           
  TCCATCACAAACCAA   CTC     CTT   ATCTTACATT                                                                                                                          
AA               ---   TAGTA   --G          ACCTTACCAAGGTTTTCAACTCTACTAAGGGCACAAACCAAGAATCTTGTGTCTCTTTACCTTACCTTGGTATACCAAGGAGTTTTCCCTTATAAGGGAGTTATACGGATTGGTAGAGTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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