Plant MITE

SE2510250

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1480
Brachypodium distachyon
SE2510250
Tc1/Mariner
St16
Bd2:31712021-31712168
TA
TACTCCCTCCGTCCAACAAAAGATGTCTCAAGTTTGTC

Secondary structure and sequence

TSD TIR

5'

3'

    C               A          G    T AAA    TCTCAAGTTTGTCAAAATTTGGATGTATCT
TACT CCTCCGTCCAACAAA GATGTCTCAA TTTG C   GATA                              
|||| ||||||||||||||| |||||||||| |||| |   ||||                               
ATGA GGAGGCAGGTTGTTT CTACAGAGTT AAAC G   TTTA                              
    A               C          G    T --A    AACTTACGTAGATATGTGATTCAGTACAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510250

TACTCCCTCCGTCCAACAAAAGATGTCTCAAGTTTGTCAAAGATATCTCAAGTTTGTCAAAATTTGGATGTATCTAGACATGACTTAGTGTATAGATGCATTCAAATTTAGTCAAAGTTGAGACATCCTTTGTTGGACGGAGGAAGTA

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