SE2550259

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1489
  • Brachypodium distachyon
  • SE2550259
  • PIF/harbinger
  • To20
  • Bd2:23591508-23591838
  • TAA
  • AGGGCATGTACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     A          TT      ATTGCCTTATCTTAGGTGTGATACGTCAATTAGAAAAGACAACAAAACATGTTGTACAATGGGTTATCTCTTATTGTTATATCTTAAAATTAATTCTTAGATGAATAAAATTAACTAAATAAATGCTAAGAAAAGGCAAA
  AGGGC TGTACAATGG  GATAAG                                                                                                                                            
  ||||| ||||||||||  ||||||                                                                                                                                            A
  TCCCG ACATGTTACC  CCACTG                                                                                                                                            
AA     C          --      CAGTCGGAAGAGAATCGCTACGGTGTATCCTATTTTAGACTGCACCTTCTCTCTCTTCACTTCTTTTCTGTGTCCGGAAGAGAATTAATTCTCTACTAGAGAAGTGTTCTTACTATTCCGTTTAAAGGGTAACATGATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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