Plant MITE

SE2550261

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1491
Brachypodium distachyon
SE2550261
PIF/harbinger
To2
Bd2:20589940-20590190
TGA
AGGGCTCATTCGGTTTGCAGGATTCTTAAAAGAT

Secondary structure and sequence

TSD TIR

5'

3'

TG                        CTT    G  TTCTAC    ---TTTCA    T  -   TTTTTTTCCTATGTGTAGCATTCGTTTCATAGGAATGAATGTGTTTCAAATTGGCCTAATTCC
  AGGGCTCATTCGGTTTGCAGGATT   AAAA AT      AGGA        ACAC TA GGA                                                               
  ||||||||||||||||||||||||   |||| ||      ||||        |||| || |||                                                                
  TCCCGAGTAAGCCAAACGTCCTAA   TTTT TA      TCCT        CCTA AC TTA                                                               
AG                        AAC    G  TCCTTA    TTTCACCT    -  C   CGGTACGTGTAACGTTAGGTATCCTACAATTTTACTCCAGAGTGGACTACGAATCTTAGGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550261

TGAGGGCTCATTCGGTTTGCAGGATTCTTAAAAGATTTCTACAGGATTTCAACACTTAGGATTTTTTTCCTATGTGTAGCATTCGTTTCATAGGAATGAATGTGTTTCAAATTGGCCTAATTCCTAAGGATTCTAAGCATCAGGTGAGACCTCATTTTAACATCCTATGGATTGCAATGTGCATGGCATTCCAATCCTCCACTTTTCCTATTCCTATGTTTTCAAAATCCTGCAAACCGAATGAGCCCTGA

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