Plant MITE

SE2550262

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1492
Brachypodium distachyon
SE2550262
PIF/harbinger
To11
Bd1:53032191-53032364
TTA
AGGCTCCGTTTGGCATTGC

Secondary structure and sequence

TSD TIR

5'

3'

TT      C            ------     -- TTAT  TAATCCCGTTGTTTTCACCCGCTTTTCGCTATTTTCGTGTTTGGCTAACCAA
  AGGCTC GTTTGGCATTGC      GGTGG  A    CA                                                    
  |||||| ||||||||||||      |||||  |    ||                                                     
  TCCGAG CAAACCGTAACG      CACGA  C    GA                                                    
AT      T            ACTTGA     CA ----  CTTTAATAAAATATTAGACGACACCTTTTTATGTGTGCTTTCATCACTTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550262

TTAGGCTCCGTTTGGCATTGCGGTGGATTATCATAATCCCGTTGTTTTCACCCGCTTTTCGCTATTTTCGTGTTTGGCTAACCAACTTTTCACTACTTTCGTGTGTATTTTTCCACAGCAGATTATAAAATAATTTCAGCACAGCACAGTTCAGCAATGCCAAACTGAGCCTTA

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