Plant MITE

SE2510263

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1493
Brachypodium distachyon
SE2510263
Tc1/Mariner
St15
Bd1:15767873-15768091
TA
TACTCCCTCCGTCGCACAATACGAGGCATGCACGTATCCCTAGATCGTCAATTTAGCTAACTAAATAT

Secondary structure and sequence

TSD TIR

5'

3'

             G  C    C                        G       AGC   C       AAATTAAATAATTA     T            -AA   CTTT
TACTCCCTCCGTC CA AATA GAGGCATGCACGTATCCCTAGATC TCAATTT   TAA TAAATAT              AAAGA TATATCATTAGA   GTT    
||||||||||||| || |||| |||||||||||||||||||||||| |||||||   ||| |||||||              ||||| ||||||||||||   |||     
ATGAGGGAGGCAG GT TTAT CTCCGTGCGTGCGTAGGGATCTAG AGTTAAA   ATT ATTTATA              TTTTT ATGTGGTAATCT   CAA    
             G  A    A                        G       CTA   A       CATACAAAGAATTG     C            AAG   TAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510263

TACTCCCTCCGTCGCACAATACGAGGCATGCACGTATCCCTAGATCGTCAATTTAGCTAACTAAATATAAATTAAATAATTAAAAGATTATATCATTAGAAAGTTCTTTTGATAACGAATCTAATGGTGTACTTTTTGTTAAGAAACATACATATTTAATTAATCAAATTGAGGATCTAGGGATGCGTGCGTGCCTCATATTATGGGACGGAGGGAGTA

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