SE2510264

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1494
  • Brachypodium distachyon
  • SE2510264
  • Tc1/Mariner
  • St9
  • Bd5:19325732-19325971
  • TA
  • TACTCCCTCCGTTTGGGTATATAAGGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
                  A          CTATT   A  C   C  C       C       -      A    TATTTAGTATATGTATACAAAAGTTATAGCATTAGAAAGAGTTTTT
TACTCCCTCCGTTTGGGT TATAAGGCTC     GAA TT GTG CA ACTTTGA CAACGAT TATGCA ATTA                                              
|||||||||||||||||| ||||||||||     ||| || ||| || ||||||| ||||||| |||||| ||||                                               
ATGAGGGAGGCAAACCCA ATATTCCGGG     CTT AA TAC GT TGAAACT GTTGTTA CGTAAC TGTT                                              
                  A          TGCGC   A  A   A  T       A       A      -    ATGCTCTAATAAAGCCGTGTTTTCTATATAACAACCTAAGCATAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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