Plant MITE

SE2550267

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1497
Brachypodium distachyon
SE2550267
PIF/harbinger
To33
Bd3:21070336-21070561
TCA
AGGCCCTGTTTGGTTGGGTTTAAAACTGCTTTTTGACTTTTGGCTTATAAGCCACAAAAGCACCTAAATAGTTGCTTTTGACTTTGGCTTTTTGC

Secondary structure and sequence

TSD TIR

5'

3'

TC                                                                T  A   T        AC     C      - TTATACCATCATCTAA
  AGGCCCTGTTTGGTTGGGTTTAAAACTGCTTTTTGACTTTTGGCTTATAAGCCACAAAAGCACC AA TAG TGCTTTTG  TTTGG TTTTTG C                
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||  ||||| |||||| |                 
  TCCGGGACAAACCAACCCGAATTTTGACGAAAGACTGAAAACCGAATATTCGGTGTTTTCGTGG TT ATC ACGAAAGC  AAACC AAAAAC G                
AC                                                                T  A   C        CA     -      T TAAACTGAACTATAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550267

TCAGGCCCTGTTTGGTTGGGTTTAAAACTGCTTTTTGACTTTTGGCTTATAAGCCACAAAAGCACCTAAATAGTTGCTTTTGACTTTGGCTTTTTGCTTATACCATCATCTAACAATATCAAGTCAAATGTCAAAAACCAAAACCGAAAGCACCTAATTTGGTGCTTTTGTGGCTTATAAGCCAAAAGTCAGAAAGCAGTTTTAAGCCCAACCAAACAGGGCCTCA

Copy Cancel