SE2510270

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1500
  • Brachypodium distachyon
  • SE2510270
  • Tc1/Mariner
  • St7
  • Bd2:50128133-50128373
  • TA
  • TACTCCCTCCATTTCACAAAGAATGGCGCCCACGCTTTTCGAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                             C     T         CGAA        A          C   T  A  TA A    A         TT             AAG  TTTT
TACTCCCTCCATTTCACAAAGAATGGCGC CACGC TTTCGAGGT    CTTTGACC ATGATTAGAC AAT GT TG  G TTAT TGTTACAAA  TTATATCATTGGA   GT    
||||||||||||||||||||||||||||| ||||| |||||||||    |||||||| |||||||||| ||| || ||  | |||| |||||||||  |||||||||||||   ||    G
ATGAGGGAGGTAAAGTGTTTCTTACCGTG GTGCG AAAGTTCTA    GAAACTGG TGTTAATCTG TTA TA AC  C AATA ACAATGTTT  AATATAGTAACCT   CA    
                             C     T         AAAC        C          A   C  A  TC G    C         TT             AAG  TAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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