Plant MITE

SE2550274

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1504
Brachypodium distachyon
SE2550274
PIF/harbinger
To33
Bd5:17370832-17371057
TAA
AGGCCCTGTTTGGTCGGGCTTAAAACTGCTTTCTGACATTTTGCTTATAAGCCACAAAAGCACCAAATTAGGTGCTTTCAGCTTTGGCTTTTGACATTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

TA              C                 C    A   T                      A  T   G      CA            ----------GA        TTGA
  AGGCCCTGTTTGGT GGGCTTAAAACTGCTTT TGAC TTT GCTTATAAGCCACAAAAGCACC AA TAG TGCTTT  GCTTTGGCTTTT            CATTTGAC    
  |||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||| || ||| ||||||  ||||||||||||            ||||||||     
  TCCGGGACAAACCA CCCGAATTTTGACGAAA ACTG AAA CGAATATTCGGTGTTTTCGTGG TT ATC ACGAAA  TGAAACCGAAAA            GTAGATTG    
AA              A                 A    A   C                      A  T   A      AC            ACGAATATGGTA        TTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550274

TAAGGCCCTGTTTGGTCGGGCTTAAAACTGCTTTCTGACATTTTGCTTATAAGCCACAAAAGCACCAAATTAGGTGCTTTCAGCTTTGGCTTTTGACATTTGACTTGATATTGTTAGATGATGGTATAAGCAAAAAGCCAAAGTCAAAAGCAACTATTTAGGTGCTTTTGTGGCTTATAAGCCAAAAGTCAAAAAGCAGTTTTAAGCCCAACCAAACAGGGCCTAA

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