Plant MITE

SE2550275

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1505
Brachypodium distachyon
SE2550275
PIF/harbinger
To24
Bd2:11178076-11178276
TAA
AGAGCATGTTCAATGCAAGGTGCTTAAGGTAGTGCTACAAAATTAAACCGGTTTATTCTCAAGCACCAGTGCTTATTTCTATACTAGAGGTGC

Secondary structure and sequence

TSD TIR

5'

3'

TA                          A  TA     --ACA   TT       -   AT   C      CA      -AT       CT G      CTAA
  AGAGCATGTTCAATGCAAGGTGCTTA GG  GTGCT     AAA  AAACCGG TTT  TCT AAGCAC  GTGCTT   TTCTATA  A AGGTGC    
  |||||||||||||||||||||||||| ||  |||||     |||  ||||||| |||  ||| ||||||  ||||||   |||||||  | ||||||     
  TCTCGTACAAGTTACGTTCCACGAAT CC  CACGA     TTT  TTTGGCC AAA  AGA TTCGTG  CACGAA   AAGATAT  T TCCACG    
AA                          C  TC     ACGCG   CT       C   AC   -      AC      CAC       CC G      AATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550275

TAAGAGCATGTTCAATGCAAGGTGCTTAAGGTAGTGCTACAAAATTAAACCGGTTTATTCTCAAGCACCAGTGCTTATTTCTATACTAGAGGTGCCTAATTAAGCACCTGTCCTATAGAACACAAGCACCAGTGCTTAGACAAAACCCGGTTTTCTTTGCGCAAGCACCTCCCTAAGCACCTTGCATTGAACATGCTCTAA

Copy Cancel