SE2530276

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1506
  • Brachypodium distachyon
  • SE2530276
  • hAT
  • Hat20
  • Bd3:30065648-30065825
  • GCCAAAAC
  • CTAGAGCTGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCCAAAA      C     ATTTT                                     C           AAAA       T ACA
       CTAGAG TGCAA     TGACCCTCAGGGTACCCTTTGACCTTTCTTAGTTCAA CAAATGAACTA    TTTAAAA G   
       |||||| |||||     ||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||| |    
       GATCTC ACGTT     ACTGGGAGTCCCATGGGAAACTGGGAAGAATCAAGTT GTTTACTTGAT    AAGTTTT C   
CAAAACC      C     GTACC                                     T           CAAA       T AAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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