SE2550280

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1510
  • Brachypodium distachyon
  • SE2550280
  • PIF/harbinger
  • To32
  • Bd3:16740930-16741197
  • TTA
  • AGGCCACTCGCAATGCATCGGCTCTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         G      A   G            G TTCTTAGACCACAATAAATACTAAGAAACCATATCTCTAATGCATTGTCTCTTAAGGTGGTATCTAAAGTAGTAGTTATTTAATAACTTTGTGAGAGA
  AGGCCACTC CAATGC TCG CTCTTAGGTGGT T                                                                                                  
  ||||||||| |||||| ||| |||||||||||| |                                                                                                   
  TCCGGTGAG GTTACG AGC GAGAATCGTGCA G                                                                                                  
AT         G      -   A            - TAAAATCTGTAAAACGACTGTACTGTAGAAGAATTACTACTTTGGCAGAGAATACGATCGCTGGCAGAGAACTGCGTTTGGTTGTTTCAGTAAGTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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