SE2550282

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1512
  • Brachypodium distachyon
  • SE2550282
  • PIF/harbinger
  • To3
  • Bd5:2351749-2351973
  • AAG
  • GGGGCCAGTTCTTTTCGGCTTCCTAGACCGGTTTCTCCGAGAAGCTGCCCTCCCCCAGTTTTCTGGAGAAACCGTCACCTAAATTTGATTAGGCTACCGAACTAGTTTGGTCTAAACTACTTTGGATGCCTAACTAAATCTGAGATATGGCTTCTTCATGAAACTAGGTGAGAGCAGCTTCTAGCAGAATCCGGTTTTAGAAGCCGAAAAGAACGCACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
 AA   -  CA               CT       T    C G         C   C  C      C       A    CA C  A     A      TA     C       G
   GGG GC  GTTCTTTTCGGCTTC  AGACCGG TTCT C AGAAGCTGC CTC CC AGTTTT TGGAGAA CCGT  C TA ATTTG TTAGGC  CCGAA TAGTTTG 
   ||| ||  |||||||||||||||  ||||||| |||| | ||||||||| ||| || |||||| ||||||| ||||  | || ||||| ||||||  ||||| ||||||| T
   CCC CG  CAAGAAAAGCCGAAG  TTTGGCC AAGA G TCTTCGACG GAG GG TCAAAG ACTTCTT GGTA  G GT TAAAT AATCCG  GGTTT ATCAAAT 
GAA   A  --               AT       T    C A         A   T  A      T       C    TA A  C     C      TA     C       C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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