SE2510283

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1513
  • Brachypodium distachyon
  • SE2510283
  • Tc1/Mariner
  • St11
  • Bd3:29949898-29950108
  • TA
  • TACTCCCTCCATTCCAAAACACAACTCATATAGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A                          TTCT      TT   CAACA  C   A T     -------C    TAC   CACCCGGCCAATAACTACTCACA
TACTCCCTCC TTCCAAAACACAACTCATATAGATTT    CATTTG  CCA     CA CTC T TTTCT        TTGG   CCG                       
|||||||||| ||||||||||||||||||||||||||    ||||||  |||     || ||| | |||||        ||||   |||                        
ATGAGGGAGG AAGGTTTTGTGTTGAGTATATCTAAA    GTGAAC  GGT     GT GAG G AAAGA        TGGT   GAG                       
          C                          -CAC      CT   --TCC  C   A C     TCACAGAC    ---   TATAACCTAATTATCATTTACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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