SE2550284

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1514
  • Brachypodium distachyon
  • SE2550284
  • PIF/harbinger
  • To35
  • Bd3:48445570-48446022
  • TAA
  • GGGCCCCTTTGATTCATAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA      -               -------     AAAACGCAGGAACGGGAAAAGTACAGGAATAAGATAGGAATGCATGTGTAAAACAGAGGATTCAAAAAACACAGGAATTTTGTAAACATGGGTGTTTGATTCACAGGAATGAAAAAGCACAGGAATTCTACAAATTAAACACAGTCAAATTAAAGTCAAACCACATGGATTAGTATAATTAGAATGTTATTATA
   GGGCCC CTTTGATTCATAGGA       TTTTG                                                                                                                                                                                                  
   |||||| |||||||||||||||       |||||                                                                                                                                                                                                   
   TCCGGG GAAACTAAGTATCCT       TCCTT                                                                                                                                                                                                  
 AA      A               TTACACC     TTCACGTCCCTATCCTTTAAAAGGAAACCACCGTGATAAGTGAGTAAACTAAGTTTCCTTAACCCATTTCCTTTTCACCTCCTTTTTAAGTAAACTAGAAACAAAGTTTCCTTTTGCATCCTTAAATTGTTAGGTGTGAGTATGGAGAAAAAACTTAAGGATACGTGTGTTTTGCTCTGTTCTCACAAGTAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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