SE2550287

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1517
  • Brachypodium distachyon
  • SE2550287
  • PIF/harbinger
  • To20
  • Bd3:50878147-50878488
  • TCA
  • AGGGCATGTACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TC                --       TCAGCCTTCTCTTAGCGATGCCACATAGGATAAAATCTGATGTGGAAGAGAGAGAAATGAAGAAAAGGCACAAGCCTTCTCTTAATTAAGAGATGATCTCTTCACAAGAATGATAAGGCAAAGATAAGGAAAATTTACCATTGTA
  AGGGCATGTACAATGG  GGTGACG                                                                                                                                                 
  ||||||||||||||||  |||||||                                                                                                                                                  
  TCCCGTACATGTTACC  CTATTCT                                                                                                                                                 
AC                AA       GGCAGAATAGAATCCGTAAGGTGCAGTTAATCTTTTCTGTTGTTTTGTACAACATGTTACCCAATAGAGAATCAGAAGATAGAGTCTTAATTACAAATCTACTTATTTTAATTGATTTATTTACGATTCTTTTCCACTTTAGATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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