SE2530288

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1518
  • Brachypodium distachyon
  • SE2530288
  • hAT
  • Hat5
  • Bd3:36343038-36343581
  • TTTGGTGG
  • GGTAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGGT             TCCGC       -   TAC    TGAGCCTTCCCATACCCTTACCCCTTCTCTTTGAACTTACCCGTTACCCGTACCCATACCCGGCAACGGGTACAACATTTTCCCATACCCATCACCCGTCAGGGTAGACGGGTACCAGTGGGTAAAAACACCATTAATAAAATTTGATCAACAACAACATGTTCCTTAGGAACGGCATCATATTTGTCAAAACCGCATCAATTTCGTCATAAACAACACTATATTAACAAAT
      GGTAGGGATGGCA     AGGGTAT GGG   GGGT                                                                                                                                                                                                                                        
      |||||||||||||     ||||||| |||   ||||                                                                                                                                                                                                                                         
      TTATCCCTACCGT     ATGGGTA TGG   GCGA                                                                                                                                                                                                                                        
GGTGGT             TACCC       T   ---    ATGGACCGCCCATTTAGGGGTAATCCCATGCCCAAACCCGGTTTTACAATTGGGTGCTCATGCATTTACCCTTTATGAAGTATGGGTAGCCCATAACGCCCATGCCCATACCCTTATGTATTGGGTATGGGAACATGGCAAGTGGGCATATTATTTGAGAGTGTCCACGCGACACGACAGCAAATGACAAAATTTACTATATAATAGGAAAATAGACACCGACAATAAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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