SE2510293

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1523
  • Brachypodium distachyon
  • SE2510293
  • Tc1/Mariner
  • St11
  • Bd3:14891465-14891675
  • TA
  • TACTCCCTCTATTCCAAAATACACCTCATATAGATTTGTGCACTTGGATCAAGACAGCTCTAGTTTCTAGTGCCTGACCACTCATATTGGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                A      C TCA         -GTG  C   GA   --AG   G   --TAG     -A       -   ------------         G G   AT
TACTCCCTCTATTCCA AATACA C   TATAGATTT    CA TTG  TCA    ACA CTC     TTTCT  GTGCCTG ACC            ACTCATATT G TTA  
|||||||||||||||| |||||| |   |||||||||    || |||  |||    ||| |||     |||||  ||||||| |||            ||||||||| | |||   
ATGAGGGAGGTAAGGT TTATGT G   ATATCTAAA    GT AAC  GGT    TGT GAG     AGAGA  CATGGGC TGG            TGAGTGTAG T AAT  
                G      T TAC         AAGA  A   AA   GTTA   G   TAAAA     AC       G   GTCGGTTATTGT         G A   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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