SE2510298

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1528
  • Brachypodium distachyon
  • SE2510298
  • Tc1/Mariner
  • St3
  • Bd3:21107467-21107729
  • N.A.
  • CTACCTCCGTTCCTAAATATAAGATGTTGTAGCTTTGTCCTAAGTCAAACTTCTTAAAGTTTGACCAAGTTTATAGAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA  A    C          A         G         CCT               AAG                       AAAAAATGTACTAA          A  AAA     ATAC    -AAAATAT   AAG
  CT CCTC GTTCCTAAAT TAAGATGTT TAGCTTTGT   AAGTCAAACTTCTTA   TTTGACCAAGTTTATAGAAAAAT              CATCTACAAT TC   TAAGT    TATG        ATC   
  || |||| |||||||||| ||||||||| |||||||||   |||||||||||||||   |||||||||||||||||||||||              |||||||||| ||   |||||    ||||        |||    
  GA GGAG CAAGGATTTA ATTCTACAA ATCGAAACA   TTCAGTTTGAAGAAT   AAACTGGTTCAAATATCTTTTTA              GTAGATGTTG AG   ATTTA    ATAC        TAG   
AA  G    A          C         G         ---               CTA                       -------GATAGTC          -  ---     ----    AAACAATT   GTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End