Plant MITE

SE2530299

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1529
Brachypodium distachyon
SE2530299
hAT
Hat23
Bd5:16240304-16240529
AACATGGC
CATGGCCAGGGGCGTAGCTAGGTGGAGGCTGCCTAATGCACA

Secondary structure and sequence

TSD TIR

5'

3'

AA    GC        T       T     C    -TAA      -   ACCAGGGTCCAAAAGGAAAATTAGTGCTAATTACACCTGATTTTTGATGGTGCACCATGGATTAG
  CATG  CAGGGGCG AGCTAGG GGAGG TGCC    TGCACA GGC                                                                 
  ||||  |||||||| ||||||| ||||| ||||    |||||| |||                                                                  
  GTAC  GTCCCCGC TCGATCC TTTTT ATGG    ACGTGT GAA                                                                 
CC    AA        C       C     T    CTCC      T   ATTGTTCTTGTGTTTAAATATATGTTAAAGTTGGTTTTTAGAGAATCGGACCACAGGACTACGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530299

AACATGGCCAGGGGCGTAGCTAGGTGGAGGCTGCCTAATGCACAGGCACCAGGGTCCAAAAGGAAAATTAGTGCTAATTACACCTGATTTTTGATGGTGCACCATGGATTAGCAGCATCAGGACACCAGGCTAAGAGATTTTTGGTTGAAATTGTATATAAATTTGTGTTCTTGTTAAAGTTGTGCACCTCGGTATTTTTTCCCTAGCTCCGCCCCTGAACATGCC

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