SE2520305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1535
  • Brachypodium distachyon
  • SE2520305
  • Mutator
  • M4
  • Bd3:47647716-47648220
  • TTGAAAAAA
  • AAGAGTAAATTTCACAAAACCACACTTCTTGAGGTTAGGGTTTCATCGGGCCACAGTTATCACTAATAGTCTCACAGAACCATAGTTTTTGGGGCACTCTGTCTCACATAACCCAAATCAGGTAGATTATATCGTTTAATGGTTTTTCTGACAGGTGGGGCCCACCTGTCAAATGCCACCTCAG

Secondary structure and sequence

TSD    TIR
5'



3'
TTGAAAA                           C   A                                           A                GG  CT          T         CA         TA      A     T   C                 C  T  A      CC    GCGAACA                 A    CTC         AC   A   AG    TTA   AGAG
       AAGAGTAAATTTCACAAAACCACACTT TTG GGTTAGGGTTTCATCGGGCCACAGTTATCACTAATAGTCTCAC GAACCATAGTTTTTGG  CA  CTGTCTCACA AACCCAAAT  GGTAGATTA  TCGTTT ATGGT TTT TGACAGGTGGGGCCCAC TG CA ATGCCA  TCAG       ACCCGTTTCGTTGCCAT TCAG   CCGGACCCG  CCG GAT  CGTT   GGT    
       ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||  |||||||||| |||||||||  |||||||||  |||||| ||||| ||| ||||||||||||||||| || || ||||||  ||||       ||||||||||||||||| ||||   |||||||||  ||| |||  ||||   |||    A
       TTCTCATTTGAAGTGTTTTGGTGTGAA AAT CCAATCCCAAAGTAGTCCGGTGTCAATAGTGATTATCAGAGTG CTTGGTGTCAAAAACC  GT  GACAGAGTGT TTGGGTTTA  CTATCTAAT  GGCAAA TACCA AAA ACTGTTCACTCTGGGTG AC GT TACGGT  AGTC       TGGGTAAAGCAACGGTG AGTC   GGCCTGGGT  GGC CTG  GCAA   CCA    
AAAAAAG                           A   C                                           C                TA  TC          C         AC         CC      C     T   A                 A  T  A      TC    -------                 C    AAA         -A   -   -G    TTC   ATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End