SE2510314

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1544
  • Brachypodium distachyon
  • SE2510314
  • Tc1/Mariner
  • St12
  • Bd1:66568736-66568995
  • TA
  • TACTCCCTCCGTTCCAAAATGTAGGGCGCATAACTTTTGTTGATTGACAAACTTTCTAAAGTTTGACCAACTTGTAACAAAAAATATCGACATCTACGGTGCCAAATGAAGAT

Secondary structure and sequence

TSD    TIR
5'



3'
         C                  C                 A    -    C              -   -   A A           C  C     T C     G     CATTAGATTC        TA
TACTCCCTC GTTCCAAAATGTAGGGCG ATAACTTTTGTTGATTG CAAA CTTT TAAAGTTTGACCAA CTT GTA C AAAAATATCGA AT TACGG G CAAAT AAGAT          TTGTGAAA  
||||||||| |||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||| ||| ||| | ||||||||||| || ||||| | ||||| |||||          ||||||||  T
ATGAGGGAG CAAGGTTTTACATCCCGC TATTGAAAACAATTGAC GTTT GAAA ATTTTAAACTGGTT GAA TAT G TTTTTATAGTT TA ATGTC C GTTTG TTCTA          AATACTTT  
         A                  A                 A    T    -              C   A   C A           A  A     T A     A     ---------T        TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End