SE2530317

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1547
  • Brachypodium distachyon
  • SE2530317
  • hAT
  • Hat24
  • Bd2:46184755-46184939
  • CCAAACAA
  • CAGGGGCGGAGCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCAAACAA   G           ---   T -       CGGTGCTGTAGCACCGGCCTGGCAAGGATGCTCACAAGAGGATTCATCGAGTATTT
        CAG GGCGGAGCCAG   GCC G GTGCTAC                                                        
        ||| |||||||||||   ||| | |||||||                                                         
        GTC CCGCCTCGGTC   GGC C GTTCCTA                                                        
AACAAACC   A           TTT   - T       CCACGATTCTACCCTGGTTACCACGATATGAACACCTAAAATGTATGACTACTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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