Plant MITE

SE2510318

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1548
Brachypodium distachyon
SE2510318
Tc1/Mariner
St13
Bd3:39657106-39657390
TA
TACTCCCTCCGTCCACAAATAAGTGTACGTTTGGG

Secondary structure and sequence

TSD TIR

5'

3'

      C        C              T    TTT    TT  TTCACAAAAAAGTGTACTACTCTCTTATCAAATCACTTTAGACTAAAAGAACTTGCTTCTTTCTCATTACACGGAAATCAAACCCAATAACATTTTTTC
TACTCC TCCGTCCA AAATAAGTGTACGT TGGG   AGAA  TG                                                                                                   
|||||| |||||||| |||||||||||||| ||||   ||||  ||                                                                                                    
ATGAGG AGGCAGGT TTTATTCACATGTA ACCC   TTAA  AG                                                                                                   
      T        A              T    ---    --  TTCTTTTTAATTCTTTACTCTGTTTTTTTACGTAACGTTTCCACGATTGGTGGTAGAGAGACTAGAAATTAAGAGGGTGGAGGTTACTCGATTTACGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510318

TACTCCCTCCGTCCACAAATAAGTGTACGTTTGGGTTTAGAATTTGTTCACAAAAAAGTGTACTACTCTCTTATCAAATCACTTTAGACTAAAAGAACTTGCTTCTTTCTCATTACACGGAAATCAAACCCAATAACATTTTTTCATGCATTTAGCTCATTGGAGGTGGGAGAATTAAAGATCAGAGAGATGGTGGTTAGCACCTTTGCAATGCATTTTTTTGTCTCATTTCTTAATTTTTCTTGAAATTCCCATATGTACACTTATTTATGGACGGATGGAGTA

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