SE2510320

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1550
  • Brachypodium distachyon
  • SE2510320
  • Tc1/Mariner
  • St15
  • Bd1:64196727-64196945
  • TA
  • TACTCCCTCCGTCTCATAATATGAGGCATGCACGCATACCTATGTTTTCAATTTAATTAATTAAATATG

Secondary structure and sequence

TSD    TIR
5'



3' 
                               A     A    T   T        A             TATATTTTTTAAC       -ACAC       TTT   ATCA
TACTCCCTCCGTCTCATAATATGAGGCATGC CGCAT CCTA GTT TCAATTTA TTAATTAAATATG             AAAAAGT     CATTAGA   GTT    
||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||| |||||||||||||             |||||||     |||||||   |||     
ATGAGGGAGGCAGGGTATTATACTCCGTGCG GCGTA GGAT TAG AGTTAAAT GATTGATTTATAT             TTTTTTA     GTAATCT   CAA    
                               C     A    C   C        G             -TTAATTTATCAA       ATATA       -TT   GAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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