SE2530321

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1551
  • Brachypodium distachyon
  • SE2530321
  • hAT
  • Hat1
  • Bd3:15823712-15823916
  • GTCATCAC
  • ACCAGGGGCGGAGGCAGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCATC     G              -----------------------------       ---------- GCCCTGGCCCTGGCCCCCTCTATGATTTCGTATTTCTACTTCAATGCCT
      ACCAG GGCGGAGGCAGGGA                             CCAGGCC          A                                                 
      ||||| ||||||||||||||                             |||||||          |                                                  
      TGGTC CCGCCTCCGTCCTT                             TACTAAA          A                                                 
CACTAC     A              TTTATATATCCCTCCCGATCTTATCTTCC       TAATCCTCCC GTTTCGTATTCTTATACTTCGACTATACCAGTTTAACGTTTCTAATACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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