Plant MITE

SE2510322

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1552
Brachypodium distachyon
SE2510322
Tc1/Mariner
St9
Bd2:40459451-40459690
TA
TACTCCCTCCGTTTGGGTTTATAAGGCTC

Secondary structure and sequence

TSD TIR

5'

3'

                             TTATT   A         C          ACAATTATTCAAATTATATTTA     -  - ATATAAACGTTATACCATTAGAAAGAGTTTTGCAATACGAAT
TACTCCCTCCGTTTGGGTTTATAAGGCTC     GAA TTTGTGCCA ACTTTGACCA                      GTATA TG T                                          
|||||||||||||||||||||||||||||     ||| ||||||||| ||||||||||                      ||||| || |                                           
ATGAGGGAGGCAAACCCAAATATTCCGGG     CTT AAATACGGT TGAAACTGGT                      TTTTT CG G                                          
                             TGAGT   A         T          ----------------------     A  T ACGATTATGCTCTAATAACGCCGTGTTTTCTATATGACAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510322

TACTCCCTCCGTTTGGGTTTATAAGGCTCTTATTGAAATTTGTGCCACACTTTGACCAACAATTATTCAAATTATATTTAGTATATGTATATAAACGTTATACCATTAGAAAGAGTTTTGCAATACGAATTTAACAGTATATCTTTTGTGCCGCAATAATCTCGTATTAGCAGTGCATTTTTTGGTCAAAGTTTGGCATAAAATTCTGAGTGGGCCTTATAAACCCAAACGGAGGGAGTA

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