SE2550326

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1556
  • Brachypodium distachyon
  • SE2550326
  • PIF/harbinger
  • To36
  • Bd2:49711240-49711619
  • TTA
  • AGGGCCCCTTTGATTCAAAAGAATTTCATAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      C         AAA  A      ------      -ATT   --    TTCT     TAAGGAATTTTTCCTTCATAGCTCATTTGGTTTGTAGGATTTGAAACCATAGGAATATTTCCTATGGACTACTTTGCATGCAATTCCAAAGGAAATTTTTCATGAGGTTCAACCTCATGGAAAATTTCCTTTG
  AGGGCC CTTTGATTC   AG ATTTCA      TAGGAA    TGG  AGGG    ATTCC                                                                                                                                     
  |||||| |||||||||   || ||||||      ||||||    |||  ||||    |||||                                                                                                                                      
  TCCCGG GAAACTAAG   TC TAAAGT      GTCCTT    CTT  GTAT    CCTAA                                                                                                                                     
AT      A         -CG  C      TTTTGT      ATTC   TT    ----     ACTTACAGTACCGTACAACTTAGGATACTTTTAAGTTTTACATCCTTACACATCATCTTCAACAAAGTAACTGGTGACCTTTTTACGTCCTAAACGAATTTCCTAATGTACGATGAGTAACAACAGTATCTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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