Plant MITE

SE2510327

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1557
Brachypodium distachyon
SE2510327
Tc1/Mariner
St11
Bd2:7405045-7405255
TA
TACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTACACTTGGACTAAGGCAGCTCTCGTTTCTAGTGTCTGACCACTCATATTGGATTAATA

Secondary structure and sequence

TSD TIR

5'

3'

    C C                              -GTA  C   GA   --AG   G   TCG     AG  TCT    A T   AT   A      GTAAA   ATG
TACT C TCCGTTCCAAAACACAACTCATATAGATTT    CA TTG  CTA    GCA CTC   TTTCT  TG   GACC C CAT  TGG TTAATA     TAG   
|||| | ||||||||||||||||||||||||||||||    || |||  |||    ||| |||   |||||  ||   |||| | |||  ||| ||||||     |||    
ATGA G AGGCAAGGTTTTGTGTTGAGTATATCTAAA    GT AAC  GGT    TGT GAG   AAAGA  AC   TTGG G GTG  GCC GGTTAT     ATC   
    A A                              AAGA  A   AA   GTTG   G   TAA     GA  --T    - C   -G   -      ---TG   AGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510327

TACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTACACTTGGACTAAGGCAGCTCTCGTTTCTAGTGTCTGACCACTCATATTGGATTAATAGTAAATAGATGTGACTAGTTATTGGCCGGGTGCGGGTTTCAAGAGAAAAATGAGGTGTGTTGTGGAACAAATGAGAAAAATCTATATGAGTTGTGTTTTGGAACGGAAGAAGTA

Copy Cancel