SE2550333

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1563
  • Brachypodium distachyon
  • SE2550333
  • PIF/harbinger
  • To14
  • Bd3:48759914-48760238
  • TTA
  • ACAGCTCGTTTGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                   TCATTTGGGCATAGAATTATAGAATTCATTTTGAATTCTATAAACAACTTGTTTGGTTGGCACGGAATTAGCCACAGGAATTCAATCTCAAATTCCATGGAATCACACTATAACTAGCCTCAAATTCCTCTCTTAAAGCCA
  ACAGCTCGTTTGGCACCCA                                                                                                                                             
  |||||||||||||||||||                                                                                                                                             T
  TGTCGAGCAAACCGTTGGT                                                                                                                                             
AT                   TCTTAAGTAAAGTAAACTAGTTTTACTTTACTTTACTTTAAAAACTATCCTAAAGTAAACCAACTTAAACTTAAGGCCTAATTTTTTAGTACAAACAGATGGTGTACCTTAACTTCTCACTCTCTGTTAATATCTCTTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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