Plant MITE

SE2510334

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1564
Brachypodium distachyon
SE2510334
Tc1/Mariner
St8
Bd1:7957586-7957824
TA
TACTCCCTCCGTTCCCAATTAATTGGCACCGGCCATTTTGCAAAAAAGCCCCTATTATTTATGAAATCAACCTGCAGTACAC

Secondary structure and sequence

TSD TIR

5'

3'

         C     C           A    CC              -  --C     A    T      A         A   ATCTTCAAT G    TGAAATGCGCGTTGATTTCGAAAAACT
TACTCCCTC GTTCC AATTAATTGGC CCGG  ATTTTGCAAAAAAG CC   CTATT TTTA GAAATC ACCTGCAGT CAC         T AACG                           
||||||||| ||||| ||||||||||| ||||  |||||||||||||| ||   ||||| |||| |||||| ||||||||| |||         | ||||                            
ATGAGGGAG CAAGG TTAATTAACCG GGTC  TAAAGCGTTTTTTT GG   GATAA AGGT CTTTAG TGGACGTCA GTG         C AAGA                           
         A     A           C    TT              A  AAC     -    -      C         G   --------- -    TGGTCTTGAAAACGTTTTTTTTGGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510334

TACTCCCTCCGTTCCCAATTAATTGGCACCGGCCATTTTGCAAAAAAGCCCCTATTATTTATGAAATCAACCTGCAGTACACATCTTCAATTGAACGTGAAATGCGCGTTGATTTCGAAAAACTAAAGGTTTTTTTTGCAAAAGTTCTGGTAGAACGTGGACTGCAGGTCGATTTCTGGAAATAGCAAGGATTTTTTTGCGAAATTTCTGGCGCCAATTAATTAGGAACAGAGGGAGTA

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