SE2550335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1565
  • Brachypodium distachyon
  • SE2550335
  • PIF/harbinger
  • To3
  • Bd1:65159627-65159851
  • GTT
  • GGGCCAGTTCTTTTCGGCTTCTTGGACCGGCTTCTCCGAGAAGCTGCCCTCACCCAGCTTCCTGGAGAAGCCGCAACCTAAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTT   CCA              CTT              G             A  C  C      G          A C       --    AGGCTAACAAACTAGTTTG
   GGG   GTTCTTTTCGGCTT   GGACCGGCTTCTCC AGAAGCTGCCCTC CC AG TTCCTG AGAAGCCGCA C TAAATTT  GATT                   
   |||   ||||||||||||||   |||||||||||||| ||||||||||||| || || |||||| |||||||||| | |||||||  ||||                   G
   CCC   CAAGAAAAGCCGAA   CCTGGCCGAAGAGG TCTTCGACGGGAG GG TC AAGGAC TCTTTGGCGT G GTTTAAA  GATC                   
TTG   ACG              TAT              A             C  A  A      G          A A       TC    CAAAGGTTTCATCTAATCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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