Plant MITE

SE2550343

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1573
Brachypodium distachyon
SE2550343
PIF/harbinger
To4
Bd1:72917546-72917781
TTA
AGGCCCTGTTTGTTTGGACTTATGCTTCAGCTTTTGGTGCTTTTAGCAATCTCAAAAGCACTTCTCCCGTTTACACATGAAGCTGAGAAGCACCTCCGGGCGTGCTTTTGGTGCTTCTAGCTGAGAAGCACGTCTGGAGGTGCTTCTTAGCTTCATGTGTAAACGGAAAAAGTGATTTTGAGATTGCTAGAAGCACCAAAAGCTGAAGCTGAAGCCCAAACAAACAGGGCCT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 A   AT                                  G     CTC                                           G T   T
  AGGCCCTGTTTGTTTGG CTT  GCTTCAGCTTTTGGTGCTTTTAGCAATCTCAAAA CACTT   CCGTTTACACATGAAGCTGAGAAGCACCTCCGGGCGTGCTTTT G GCT 
  ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||| | ||| C
  TCCGGGACAAACAAACC GAA  CGAAGTCGAAAACCACGAAGATCGTTAGAGTTTT GTGAA   GGCAAATGTGTACTTCGATTCTTCGTGGAGGTCTGCACGAAGA T CGA 
AT                 C   GT                                  A     AAA                                           G -   T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550343

TTAGGCCCTGTTTGTTTGGACTTATGCTTCAGCTTTTGGTGCTTTTAGCAATCTCAAAAGCACTTCTCCCGTTTACACATGAAGCTGAGAAGCACCTCCGGGCGTGCTTTTGGTGCTTCTAGCTGAGAAGCACGTCTGGAGGTGCTTCTTAGCTTCATGTGTAAACGGAAAAAGTGATTTTGAGATTGCTAGAAGCACCAAAAGCTGAAGCTGAAGCCCAAACAAACAGGGCCTTA

Copy Cancel