SE2550345

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1575
  • Brachypodium distachyon
  • SE2550345
  • PIF/harbinger
  • To17
  • Bd5:25601473-25601848
  • TTA
  • AGGGCCTCTTTGATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     C          GCAAGATTTAAAAAACACAGGAATAGGAAAAACA       -   - TG     GCATGTTTATTCCTATGAAAATTCAAAATACAGGAACGTGTAGTAGAAGTTGTTTATTGCACCACATGAAAAATGTAGGATTTGCTTAAAGGATTATGTGCTACTCATTGTTTTCAGAGACAAAGGAAATTTTCC
  AGGGC TCTTTGATTC                                  TAGGATT TGA A  TCATG                                                                                                                                       
  ||||| ||||||||||                                  ||||||| ||| |  |||||                                                                                                                                        
  TCCCG GGAAACTAAG                                  TTTCCTT AAG A  TCCTT                                                                                                                                       
AT     A          ----------------------------------       A   T --     TAAACCTCCCAAGATAAGGATTTCTTAACAAGGAAATAGAGCAAACTAAACGTCCTAAACTTTGGTACCCTTATAAAGGATACTTGATCAAACGTACGTTAAGGTTTCCTTTTAAAGATAATCCAGGTTGGAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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