SE2550353

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1583
  • Brachypodium distachyon
  • SE2550353
  • PIF/harbinger
  • To13
  • Bd1:13500499-13500742
  • TAA
  • AGGGCATCTTCAACAATTGTTATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               ---          ------------  CG GTACCAAGAAATACTAGACCAATGAGAACAAGACTTGAATAAAATAAATAGGTAGTGGTTACTTGAAGAAGTAACAGCCTCTA
  AGGGCATCTTCAACA   ATTGTTATTA            CA  G                                                                                   
  |||||||||||||||   ||||||||||            ||  |                                                                                   C
  TCCCGTAGAGGTTGT   TAACAATAAT            GA  G                                                                                   
AA               CAC          TAAGAGAAGAGA  -- AAGAACTCATATAAAAAATAAAAATAAAACAAAAGAAAGAACTACCTAGGTGTACAGTAGAAGAAGAAAAAGAACCATAGGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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