Plant MITE

SE2550354

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1584
Brachypodium distachyon
SE2550354
PIF/harbinger
To21
Bd4:1100422-1100701
TAA
AGGCTGCTCATAGTGGGAGTAATTTAGGTAGTAACAT

Secondary structure and sequence

TSD TIR

5'

3'

TA      C         -       T   -          -      C AACTAGACATTTTGGTGACATGACATGGTATTAAATGAAGAAAGAGAAGGAGTTGGTAACTAGATATGTTACCATCACATCACACAAATCAA
  AGGCTG TCATAGTGG GAGTAAT TAG GTAGTAACAT AAGATG C                                                                                            
  |||||| ||||||||| ||||||| ||| |||||||||| |||||| |                                                                                             
  TCCGAC AGTGTCACC CTCATTG ATC CATCATTGTA ATATAC A                                                                                            
AA      C         T       T   T          C      - ATGATCAGATTTAATGGTGGAGGTATTACTCATCATTGTATATACACCACAGTACGTAACAAAGTAAATAATCAAACATCTGAATAGAACGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550354

TAAGGCTGCTCATAGTGGGAGTAATTTAGGTAGTAACATAAGATGCCAACTAGACATTTTGGTGACATGACATGGTATTAAATGAAGAAAGAGAAGGAGTTGGTAACTAGATATGTTACCATCACATCACACAAATCAAAGCAAGATAAGTCTACAAACTAATAAATGAAACAATGCATGACACCACATATATGTTACTACTCATTATGGAGGTGGTAATTTAGACTAGTAACATATACATGTTACTACTCTATGTTACTCTCCACTGTGACCAGCCTAA

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