SE2520357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1587
  • Brachypodium distachyon
  • SE2520357
  • Mutator
  • M6
  • Bd1:65200493-65201021
  • TTTGAAATA
  • AGAGTAAAATACACCACCAGTCCATGAACTCGGCAAAAATGGACACTTTAGTCCACGAACTCGGAAGCCGCACATTTAAACCCCTAAACTGGGACTACTGTGTCACTTTAGTCCAAAACAGTTCAGTGAGGCTTAAACACGCCACGTGGCCGCCACATCGGATTCGG

Secondary structure and sequence

TSD    TIR
5'



3'
TTTGAAAT                 C    C                T                   CTC     C                                         A        -CA    A                        CC          A     GAAA                       A         TT          ---  G   A    TCAGG        ATCCTCGTCTAGGCGCG
        AGAGTAAAATACACCAC AGTC ATGAACTCGGCAAAAA GGACACTTTAGTCCACGAA   GGAAG CGCACATTTAAACCCCTAAACTGGGACTACTGTGTCACTTT GTCCAAAA   GTTC GTGAGGCTTAAACACGCCACGTGG  GCCACATCGG TTCGG    GACCGCGGGCTGCTACTCGATTT CTTAGGGTT  TTTTTTGCAA   CG CGT GTTC     GCCCTAGG                 
        ||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||   |||| ||||||||||||||||||||||||  |||||||||| |||||    ||||||||||||||||||||||| |||||||||  ||||||||||   || ||| ||||     ||||||||                 G
        TCTCATTTTATGTGGTG TCAG TACTTGAGCTGTTTTT CTTGTGAAATCAGGTGCTT   TCTTT GCGTGTGAATTTGGGGATTTGACCCTGATGACACAGTGAAA CAGGTTTT   CAAG CGCTCCGAATTTGTGCGGTGCATC  CGGTGTAGTC AAGCC    CTGGCGCCTGGCGATGAGCTAAA GAGTCCTAA  AAAAAACGTT   GT GTA CGGG     TCGGCGGG                 
ATAAAGTT                 A    A                T                   AAA     T                                         C        TAC    C                        AA          G     GATC                       A         -C          TTA  G   -    ----C        GCGCTCCCCGTTCCGCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End