Plant MITE

SE2510361

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1591
Brachypodium distachyon
SE2510361
Tc1/Mariner
St7
Bd2:42238701-42238937
TA
TACTCCCTCCATTTCACAAAGAATGGCACGCACGCATTTCAAGATTTTACTTTGACCAATAATTACACTAAT

Secondary structure and sequence

TSD TIR

5'

3'

          A     C          ACG     A    A  A  TT            A    C      -GATTTC    TT          AAA   A    A     TTC  ATTT
TACTCCCTCC TTTCA AAAGAATGGC   CACGC TTTC AG TT  ACTTTGACCAAT ATTA ACTAAT       AGGT  ATGTGTTGCA   ATT TATC TTGGA   GT    
|||||||||| ||||| ||||||||||   ||||| |||| || ||  |||||||||||| |||| ||||||       ||||  ||||||||||   ||| |||| |||||   ||    C
ATGAGGGAGG AAAGT TTTCTTACCG   GTGCG AAAG TC AG  TGAAACTGGTTG TAAT TGGTTA       TCTA  TATGCAATGT   TAA ATAG AACCT   CA    
          A     A          CAG     A    C  C  CT            C    C      AAATACA    -T          ---   -    C     TTC  AAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510361

TACTCCCTCCATTTCACAAAGAATGGCACGCACGCATTTCAAGATTTTACTTTGACCAATAATTACACTAATGATTTCAGGTTTATGTGTTGCAAAAATTATATCATTGGATTCGTATTTCAAAAACCTTTCCAACGATAAATTGTAACGTATTATCTACATAAAATTGGTCTAATCGTTGGTCAAAGTTCGACCTCGAAAAGCGTGGACGCCATTCTTTATGAAAAGGAGGGAGTA

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