SE2520364

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1594
  • Brachypodium distachyon
  • SE2520364
  • Mutator
  • M28
  • Bd3:33517650-33518168
  • TATTAATAA
  • TATTAATAAGAGATAAATGCACCCGTGGTCGTACTATTATTGAGTTGGTGTCACTTTAGTCCTAAAATTATGAAATTGCACACTTAGGTCCTAATTTTATTTTAAATGGCTCACACAAGGCCCTAAGCTGGTTCTGGAGCGTTTGACCCGCTACGTGACACGTTGACCCGATACATGTCAGCAATGGGGGCCCACAGACCATAACCAATGCCAATGTAATTTAGCAGAAACCCCCTCGCGGAAGG

Secondary structure and sequence

TSD    TIR
5'



3'
         A   A         CC      G       A             AC        T                                          A        A A   C                A             -      A A          A           AAT             C           C A        T            CTC   G    AAAACAAGGGGAGA
 TATTAATA GAG TAAATGCAC  GTGGTC TACTATT TTGAGTTGGTGTC  TTTAGTCC AAAATTATGAAATTGCACACTTAGGTCCTAATTTTATTTTAA TGGCTCAC C AGG CCTAAGCTGGTTCTGG GCGTTTGACCCGC TACGTG C CGTTGACCCG TACATGTCAGC   GGGGGCCCACAGA CATAACCAATG C ATGTAATT AGCAGAAACCCC   GCG AAGG              
 |||||||| ||| |||||||||  |||||| ||||||| |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||| ||||||||||||| |||||| | |||||||||| |||||||||||   ||||||||||||| ||||||||||| | |||||||| ||||||||||||   ||| ||||              A
 ATAATTAT CTC ATTTACGTG  CGCCAG ATGATAA AACTCAACCACAG  AAATCAGG TTTTAATACTTTAACGTGTGAATCCAGGATTAAAATAAAATT ACCGAGTG G TCC GGATTCGACCAAGACC TGCAAACTGGGCG ATGTAC G GCAACTGGGC ATGTGCAGTCG   CTCCCGGGTGTCT GTATTGGTTAC G TACATTAA TCGTCTTTGGGG   CGT TTCC              
A        -   C         TA      G       A             AA        T                                          C        C C   A                G             C      C A          C           -CT             A           C C        T            CAA   A    CGGTAGAGAAAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End