SE2510367

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1597
  • Brachypodium distachyon
  • SE2510367
  • Tc1/Mariner
  • St10
  • Bd1:27076343-27076555
  • TA
  • TACTCCCTCCGATCCATAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
             C        TTATCACGCACTTAT   AAAATTT            A              -----------CG      TAC         GA G TT
TACTCCCTCCGAT CATAAAAA               TAC       GTACTCCTTCCG TCCATATTAATTGT             AAATAT   ATGTATCTA  C T  
||||||||||||| ||||||||               |||       |||||||||||| ||||||||||||||             ||||||   |||||||||  | |  T
ATGAGGGAGGCTA GTATTTTT               ATG       CATGGGGGAGGT AGGTATAATTAACA             TTTATA   TACATAGAT  G A  
             A        CACAACGATTAAAAC   GTTCAAT            C              AAGTTTAAACACG      -CT         AC G TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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