SE2520370

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1600
  • Brachypodium distachyon
  • SE2520370
  • Mutator
  • M9
  • Bd2:10666924-10667436
  • TTCAAAGAA
  • GAAGGGGAAATTTGCCGAAGAACACCGTTATTTTGTGGCCTTTGTCGAAACACATCGTCGGAATGTGTCTTTGTCCAGTACCATTACAATTTCGTGAACATTTGCTAGAACACACTGCGTCGACTAAAATTGAGAATTTGAC

Secondary structure and sequence

TSD    TIR
5'



3'
TTCAAA            T  C AA A                  C                                  C                 C   A       C         C  C  CGA       T    A      ATTCTATTT  GACTACCATCGTAAATCCGATTTTGAAAACTTTTTTCCCTTTCTACGAATCAATTTTTGACATCTAGTAGGGTCCATCGTTGGTCGATGTGGGCATTCA
      GAAGGGGAAATT GC G  G ACACCGTTATTTTGTGGC TTTGTCGAAACACATCGTCGGAATGTGTCTTTGT CAGTACCATTACAATTT GTG ACATTTG TAGAACACA TG GT   CTAAAAT GAGA TTTGAC         GG                                                                                                   
      |||||||||||| || |  | |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||| || ||   ||||||| |||| ||||||         ||                                                                                                    
      CTTCCCTTTTAA CG C  C TGTGGCAATAAAACACCG AAACAGCTTTGTGTGGCAGCCTTACACAGAAACA GTCATGGTAATGTTAAA CAC TGTAAAC GTCTTGTGT AC TA   GATTTTG CTTT AAACTG         GT                                                                                                   
AAGAAA            C  A CC C                  A                                  A                 A   C       A         A  A  ATA       C    C      ---AAAAAA  GTAATTTAATAGTAAGATGGGAAATCGTTTACACAGATCTTAGAAAGTTTGATAAACAAGCTTCGCAAAAAGAGAGGATCTCGCGCCGTTGTTTCCACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End