SE2510371

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1601
  • Brachypodium distachyon
  • SE2510371
  • Tc1/Mariner
  • St3
  • Bd3:56888410-56888671
  • TA
  • TACTCCCTCAGTTCCTAAATATAAGATGTTCTAGCTTTGTCCTAATTCAAACTTCTTTAAGTTTGACCATGTTTATAGAAAAATATATTAATATGTACAATATCAAATAAGTATGCTATGAAAATAT

Secondary structure and sequence

TSD    TIR
5'



3'
     -    A                              C    T  A       TTA          T          A   A      T  G    ATA  -    A   ATG TA    AA   ATAT
TACTC CCTC GTTCCTAAATATAAGATGTTCTAGCTTTGT CTAA TC AACTTCT   AGTTTGACCA GTTTATAGAA AAT TATTAA AT TACA   TC AAAT AGT   C  TGAA  TAT    
||||| |||| |||||||||||||||||||||||||||||| |||| || |||||||   |||||||||| |||||||||| ||| |||||| || ||||   || |||| |||   |  ||||  |||     
ATGAG GGGG CAAGGATTTATATTCTACAAGATCGAAACA GATT AG TTGAAGA   TCAAACTGGT CAAATATCTT TTA ATGGTT TA ATGT   AG TTTA TCA   G  ATTT  GTA    
     A    -                              A    C  C       TTC          T          C   G      T  G    -CG  A    A   AAA TA    AG   GCTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End