SE2530373

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1603
  • Brachypodium distachyon
  • SE2530373
  • hAT
  • Hat9
  • Bd5:24033305-24033618
  • GTAGAAAC
  • ACTATACCTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAGAA              TGGGT     --    T            ----       CCGACGTCCCGGGCCGGGCTCGGACCTCCCTTTCCAGTCCCAAGCCCGGCCCGAAAGCCCGGAAAAGCCTGGAATGACTAAAAACGGGTATTTTTAGAAAAA
      ACTATACCTGGGCA     GGCCC  GGCC GGCCAGCCCGGC    CCGAAGC                                                                                                      
      ||||||||||||||     |||||  |||| ||||||||||||    |||||||                                                                                                      A
      TGATATGGACCCGT     TTGGG  CCGG CCGGCCCGAAGT    TCGGACT                                                                                                      
CAAAGA              -----     GC    C            ATTT       GCCAGTTTGAACTTCGGGCTCGGGCCGGGCTTTGTGGCTTTTATCCAGTAAATTCGTAATTTTATTAATAAAAACTTTATTTATTTACTAAAAAATATGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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