Plant MITE

SE2510377

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1607
Brachypodium distachyon
SE2510377
Tc1/Mariner
St13
Bd2:24212653-24212935
TA
TACTCCCTCCGTCCACATACAAGTGTACATATGGG

Secondary structure and sequence

TSD TIR

5'

3'

             C   TAC        ATA    -----------A    - AAGAAAATTAAGAAATGAGATAGAAAATGCATTGAGAAGGTGCCAACCACCACCTCTCTCCTCTTTAATTCTCCCACCCCCAATGAGCTAAGTG
TACTCCCTCCGTC ACA   AAGTGTAC   TGGG            ATTT C                                                                                              
||||||||||||| |||   ||||||||   ||||            |||| |                                                                                              C
ATGAGGGAGGTAG TGT   TTCACATG   ATCC            GGTG T                                                                                              
             T   TTA        CAA    AAATTTTAAACA    T TACTCACATGAAGAGAGAAAAGTTTCGTGAAATCTGATTTTTTTGAACGAACAAAGAGTAATGTGCCTTTAGTTTGGGTTATTGTAAAGAAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510377

TACTCCCTCCGTCCACATACAAGTGTACATATGGGAATTTCAAGAAAATTAAGAAATGAGATAGAAAATGCATTGAGAAGGTGCCAACCACCACCTCTCTCCTCTTTAATTCTCCCACCCCCAATGAGCTAAGTGCATGAAGAAATGTTATTGGGTTTGATTTCCGTGTAATGAGAAACAAGCAAGTTTTTTTAGTCTAAAGTGCTTTGAAAAGAGAGAAGTACACTCATTTGTGGACAAATTTTAAACCTAAACGTACACTTATTTGTTGATGGAGGGAGTA

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