Plant MITE

SE2510379

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1609
Brachypodium distachyon
SE2510379
Tc1/Mariner
St2
Bd2:9217847-9218067
TA
TACTACCTCCGTTCCGGTATATGGGGCCCCAACGCATCCCTAGGTTAAAGATTTAACTAATTTAACATGATTTTTATATCACAAAAATTATACTACTAGAAAATAGA

Secondary structure and sequence

TSD TIR

5'

3'

    A             --AT        -   A     C        A              T        T                     C  C      -A    AC
TACT CCTCCGTTCCGGT    ATGGGGCC CCA CGCAT CCTAGGTT AAGATTTAACTAAT TAACATGA TTTTATATCACAAAAATTATA TA TAGAAA  TAGA  
|||| |||||||||||||    |||||||| ||| ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||| || ||||||  ||||   
ATGA GGAGGCAAGGCCA    TACCCCGG GGT GCGTA GGATCCAA TTCTAAATTGATTA ATTGTACT AAAATATAGTGTTTTTAATAT GT ATCTTT  ATTT  
    G             AATT        A   -     T        C              C        C                     A  A      GA    TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510379

TACTACCTCCGTTCCGGTATATGGGGCCCCAACGCATCCCTAGGTTAAAGATTTAACTAATTTAACATGATTTTTATATCACAAAAATTATACTACTAGAAAATAGAACATTTTAAGTTTCTAATGATATAATTTTTGTGATATAAAACTCATGTTACATTAGTTAAATCTTCAACCTAGGTATGCGTGGAGGCCCCATTTAAACCGGAACGGAGGGAGTA

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