SE2520382

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1612
  • Brachypodium distachyon
  • SE2520382
  • Mutator
  • M5
  • Bd4:5565550-5565768
  • ATTATTCAT
  • ATGGGTGTGGCTATTTCTAAATCACCTGTTTTTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATTC  G   GTG      TC   A  A            GAAAT   GTTTAAAT            TTCAG            AA     ----------------------      CAT
       AT GGT   GCTATT  TAA TC CCTGTTTTTTAA     GAG        ATCAATCGATGT     AGCTGTTGGGTT  GATCT                      GAGGGT   
       || |||   ||||||  ||| || ||||||||||||     |||        ||||||||||||     ||||||||||||  |||||                      ||||||   C
       TA CCA   CGATAA  ATT AG GGACAAAAAATT     CTC        TAGTTAGTTGTA     TCGGTAGCCTAG  CTAGG                      CTCTCA   
TACTTAT  G   AAA      CT   C  C            --GAT   --------            --CAA            AA     TTGCTATCTTTCACTCTCTACT      CCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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